業績

2020

• *#Takahashi H., #Yoshizaki T., Kondo H., Motomura T., Murase M., Takahashi A., Fukuyoshi S., Machida C., Kanamasa S., Shimizu H. and *Iwaguchi S., Draft Genome Sequence of Saccharomyces cerevisiae Strain P-684, Isolated from Prunus verecunda, Microbiol. Resour. Announc., 9(41), e00926-20, 2020 [PubMed]
  
• Iwakawa H., Takahashi H., *Machida Y., and *Machida C., Roles of ASYMMETRIC LEAVES2 (AS2) and nucleolar proteins in the adaxial-abaxial polarity specification at the perinucleolar region in Arabidopsis, Int. J. Mol. Sci., 21(19), E7314, 2020 [PubMed]
  
• *#Takahashi H., Sakagawa E., Toyoda R., Motomura T., Murase M., Takahashi A., Fukuyoshi S., and *#Kanamasa S., Draft Genome Sequence of Glycoside Hydrolase-Producing Trichoderma asperellum Strain IC-1, Microbiol. Resour. Announc., 9(40), e00958-20, 2020 [PubMed]
  
• #*Takahashi H., #Miyaki S., #Onouchi H., Motomura T., Idesako N., Takahashi A., Murase M., Fukuyoshi S., Endo T., Satou K., Naito S., and *Itoh M., Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes, Sci. Rep., 10, 16289, 2020 [PubMed]
  
• Nakayoshi T., Kato K., Fukuyoshi S., Takahashi H., Takahashi O., Kurimoto E., *Oda A., Computational studies on nonenzymatic succinimide-formation mechanisms of the aspartic acid residues catalyzed by two water molecules, Biochim. Biophys. Acta Proteins Proteom, 1868(9), 140459, 2020 [PubMed]
  
• *Shimada T. L., Yamaguchi K., Shigenobu S., Takahashi H., Murase M., Fukuyoshi S., Hara-Nishimura I., Excess sterols disrupt plant cellular activity by inducing stress-responsive gene expression, J. Plant Res., 133(3), 383-392, 2020 [PubMed]
  
• *#Takahashi H., Minami T., Okabe M., Park E.Y., Fujimoto T., Takahashi A., Murase M., Fukuyoshi S., Satou K., and *#Kanamasa S., Draft Genome Sequence of Aspergillus terreus High-Itaconic-Acid-Productivity Strain IFO6365, Microbiol. Resour. Announc., 9(16), e00080-20, 2020 [PubMed]
  
• *#Takahashi H., #Hayashi N., Hiragori Y., Sasaki S., Motomura T., Yamashita Y., Naito S., Takahashi A., Fuse K., Satou K., Endo T., Kojima S., and *Onouchi H., Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA, BMC Genomics, 21, 260, 2020 [PubMed]
  
• Luo L., Ando S., Sakamoto Y., Suzuki T., Takahashi H., Ishibashi N., Kojima S., Kurihara D., Higashiyama T., Yamamoto K., Matsunaga S., Machida C., *Sasabe M., *Machida Y., The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2, Plant J., 101(5), 1118-1134, 2020 [PubMed]
  
• Rahim A, Saito Y, Fukuyoshi S, Miyake K, Goto M, Chen CH, Alam G, Lee KH, Nakagawa-Goto K. Paliasanines A-E, 3,4-Methylenedioxyquinoline Alkaloids Fused with a Phenyl-14-oxabicyclo[3.2.1]octane Unit from Melochia umbellata var. deglabrata. J Nat Prod., 83(10), 2931-2939, 2020 [PubMed]
  
• Yamashita M., Saito Y., Rahim A., Fukuyoshi S., Miyake K, Goto M, Nakagawa-Goto K., Novel furoquinolinones from an Indonesian Plant, Lunasia amara, Tetrahedron Lett., 61(20) 151861, 2020 [ScienceDirect]
  

2019

• Vial-Pradel S., Hasegawa Y., Nakagawa A., Miyaki S., Machida Y., Kojima S., *Machida C., *Takahashi H., SIMON: Simple methods for analyzing DNA methylation by targeted bisulfite next-generation sequencing, Plant Biotechnol., 36(4), 213-222, 2019 [PubMed]
  
• *#Kanamasa S., Minami T., Okabe M., Park E.Y., Fujimoto T., Takahashi A., Murase M., Fukuyoshi S., Oda A., Satou K., and *#Takahashi H., Draft Genome Sequence of Aspergillus terreus High Itaconic Acid Productivity Mutant TN-484, Microbiol. Resour. Announc., 8(49), e01170-19, 2019 [PubMed]
  
• *#Kanamasa S., Yamaguchi D., Machida C., Fujimoto T., Takahashi A., Murase M., Fukuyoshi S., Oda A., Satou K., and *#Takahashi H., Draft Genome Sequence of Saccharomyces cerevisiae Strain Pf-1, Isolated from Prunus mume, Microbiol. Resour. Announc., 8(46), e01169-19, 2019 [PubMed]
  
• Kita K., Fukuda K., Takahashi H., Tanimoto A., Nishiyama A., Arai S., Takeuchi S., Yamashita K., Ohtsubo K., Otani S., Yanagimura N., Suzuki C., Ikeda H., Tamura M., Matsumoto I., *Yano S., Patient-derived xenograft models of non-small cell lung cancer for evaluating targeted drug sensitivity and resistance, Cancer Sci., 110(10), 3215-3224, 2019 [PubMed]
  
• Kato, K., Nakayoshi, T., Kurimoto, E. and Oda, A. Computational Studies on the Nonenzymatic Deamidation Mechanisms of Glutamine Residues, ACS Omega, 4(2), 3508-3513, 2019 [PubMed]
  
• Nakayoshi, T., Fukuyoshi, S., Kato, K., Kurimoto, E. and Oda, A. Computational studies on water-catalyzed mechanisms for stereoinversion of glutarimide intermediates formed from glutamic acid residues in aqueous phase, Int. J. Mol. Sci., 20(10), E2410, 2019 [PubMed]
  
• Aimaiti, S., Saito, Y., Fukuyoshi, S., Goto, M., Miyake, K., Newman, D. J., O’Keefe, B. R., Lee, K. H. and Nakagawa-Goto, K. Isolation, structure elucidation, and antiproliferative activity of butanolides and lignan glycosides from the fruit of hernandia nymphaeifolia. Molecules, 24 (21), E4005, 2019 [PubMed]
  
• Oda, A., Nakayoshi, T., Kato, K., Fukuyoshi, S. and Kurimoto, E. Three dimensional structures of putative, primitive proteins to investigate the origin of homochirality. Sci. Rep., 9 (1), 11594, 2019 [PubMed]
  
• Tsurumi, F., Miura, Y., Nakano, M., Saito, Y., Fukuyoshi, S., Miyake, K., Newman, D. J., O’Keefe, B. R., Lee, K. H. and Nakagawa-Goto, K. Spiro[3.5]nonenyl Meroterpenoid Lactones, Cryptolaevilactones G-L, an Ionone Derivative, and Total Synthesis of Cryptolaevilactone M from Cryptocarya laevigata, J. Nat. Prod., 82 (9), 2368-2378, 2019 [PubMed]
  

2018

• *Takahashi H., Tanaka S., Hayashi S., Miyaki S., Takahashi A., Onai S., Fukuyoshi S., and *Miyasaka H., Draft Genome Sequence of the Trebouxiophyceae sp. Strain KSI-1 Isolated from the Seashore Hot Spring, Microbiol. Resour. Announc., 7(16), e01185-18, (2018) [PubMed]
  
• *Takahashi H., Sakagawa E., Sakakibara I., Machida C., Miyaki S., Takahashi A., Onai S., Fukuyoshi S., Ohta A., Satou K., and *Kanamasa S., Draft Genome Sequence of Yeast Saccharomyces cerevisiae Strain Hm-1 Isolated from Cotton Rosemallow, Microbiol. Resour. Announc., 7(13), e01184-18, 2018[PubMed]
  
• Vial-Pradel S., Keta S., Nomoto M., Luo L., Takahashi H., Suzuki M., Yokoyama Y., Sasabe M., Kojima S., Tada Y., *Machida Y.and *Machida C. Arabidopsis zinc-finger-like protein ASYMMETRIC LEAVES2 (AS2) and two nucleolar proteins maintain gene body DNA methylation in the leaf polarity gene ETTIN (ARF3), Plant Cell Physiol., 59(7), 1385-1397 (2018) [PubMed]
  
• Tomoki Nakayoshi, Shuichi Fukuyoshi, Ohgi Takahashi, Akifumi Oda, Computational studies on non-succinimide-mediated stereoinversion mechanism of aspartic acid residues assisted by phosphate, Molecular Physics, 116, 686‒696 (2018)
  
• Simayijiang Aimaiti, Airi Suzuki, Yohei Saito, Shuichi Fukuyoshi, Masuo Goto , Katsunori Miyake, David J. Newman, Barry R. O’Keefe, Kuo-Hsiung Lee , and Kyoko Nakagawa-Goto , Corymbulosins I–W, Cytotoxic Clerodane Diterpenes from the Bark of Laetia corymbulosa, J. Org. Chem., 2018, 83 (2), pp 951–963
  
• Hikaru Fujita, Satoshi Kakuyama, Shuichi Fukuyoshi, Naoko Hayakawa, Akifumi Oda, and Munetaka Kunishima , Triazine-Based Cationic Leaving Group: Synergistic Driving Forces for Rapid Formation of Carbocation Species, J. Org. Chem., 2018, 83 (8), pp 4568–4580
  
• Tomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, Ohgi Takahashi, Eiji Kurimoto, Akifumi Oda, Comparison of the activation energy barrier for succinimide formation from α- and β-aspartic acid residues obtained from density functional theory calculations, Biochimica et Biophysica Acta, Proteins and Proteomics, 1866(7) 2018 759-766
  
• Akifumi Oda, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Noriyuki Yamaotsu, Shuichi Hirono, Ohgi Takahashi, Validation of molecular force field parameters for peptides including isomerized amino acids, Chirality Vol.30(4) 2018 pp. 332-341
  
• Tomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, Ohgi Takahashi, Eiji Kurimoto, Akifumi Oda, Computational studies on the water-catalyzed stereoinversion mechanism of glutamic acid residues in peptides and proteins, Chirality, 30(5), 527‒535 (2018)
  
• Akifumi Oda, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Ohgi Takahashi, Influences of conformations of peptides on stereoinversions and/or isomerizations of aspartic acid residues, Biochimica et Biophysica Acta, Proteins and Proteomics, Vol 1866, Issue 7, 2018, Pages 783-788
  

2017

• Hayashi N., Sasaki S., Takahashi H., Yamashita Y., Naito S., *Onouchi H. Identification of Arabidopsis thaliana upstream open reading frames encoding peptide sequences that cause ribosomal arrest, Nucleic Acids Res., 45(15), 8844-8858, 2017 (DOI: 10.1093/nar/gkx528)[PubMed]
  
• *Maeda R., Tamashiro H., Takano K., Takahashi H., Suzuki H., Saito S., Kojima W., Adachi N., Ura K., Endo T., and Tamura T. TBP-like protein (TLP) disrupts the p53-MDM2 interaction and induces long-lasting p53 activation, J. Biol. Chem., 292(8), 3201-3212, 2017 (DOI: 10.1074/jbc.M116. 763318)[PubMed]
  
• Shuichi Fukuyoshi, Tomoki Nakayoshi, Ohgi Takahashi, Akifumi Oda, Theoretical Study on Keto-enol Tautomerization of Glutarimide for Exploration of the Isomerization Reaction Pathway of Glutamic Acid in Proteins Using Density Functional Theory, Molecular Physics, 115, 560‒565 (2017)
  
• Airi Suzuki, Yohei Saito, Shuichi Fukuyoshi, Masuo Goto, Katsunori Miyake, David J. Newman, Barry R. O’Keefe, Kuo-Hsiung Lee, and Kyoko Nakagawa-Goto, Corymbulosins D–H, 2-Hydroxy- and 2-Oxo-clerodane Diterpenes from the Bark of Laetia corymbulosa, J. Nat. Prod., 2017, 80 (4), pp 1065–1072
  
• Yurie Watanabe, Shuichi Fukuyoshi, Koichi Kato, Masahiro Hiratsuka, Noriyuki Yamaotsu, Shuichi Hirono, Hiroaki Gouda, Akifumi Oda, Investigation of substrate recognition for cytochrome P450 1A2 mediated by water molecules using docking and molecular dynamics simulations, Journal of Molecular Graphics and Modelling 74, 2017, 326-336
  
• Koichi Kato, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto and Akifumi Oda, Validation of Molecular Dynamics Simulations for Prediction of Three-Dimensional Structures of Small Proteins, Molecules 2017, 22(10), 1716
  
• Faradiba Abdul Rasyid, Shuichi Fukuyoshi, Hirokazu Ando, Katsunori Miyake, Toshiyuki Atsumi, Tetsuo Fujie, Yohei Saito, Masuo Goto, Tomohiro Shinya, Masayuki Mikage, Yohei Sasaki, Kyoko Nakagawa-Goto, A Novel Clerodane Diterpene from Vitex cofassus, Chem. Pharm. Bull.,65 (1) 2017 p. 116-120
  
• Akifumi Oda, Shuichi Fukuyoshi, Eiji Kurimoto, Determination of molecular force field parameters for nitronyl nitroxide derivatives using quantum chemical calculations, Polyhedron Vol 136, 4 2017, Pages 93-101
  

2016

• *Miyasaka H., Ogata T., Tanaka S., Ohama T., Kano S., Fujiwara K., Hayashi S., Yamamoto S., Takahashi H., Matsuura H., and Hirata K. Is chloroplastic class IIA aldolase a marine enzyme?, ISME J, 10(11), 2767-2772, 2016 (DOI: 10.1038/ismej.2016.52)[PubMed]
  
• Maruta T., Ogawa T., Tsujimura M., Ikemoto K., Yoshida T., Takahashi H., Yoshimura K., and *Shigeoka S. Loss-of-function of an Arabidopsis NADPH pyrophosphohydrolase, AtNUDX19, impacts on the pyridine nucleotides status and confers photooxidative stress tolerance, Sci. Rep., 6, 37432, 2016 (DOI: 10.1038/srep37432)[PubMed]
  
• Matsumura Y., Ohbayashi I., Takahashi H., Kojima S., Ishibashi N., Keta S., Nakagawa A., Hayashi R., Saez-Vasquez J., Echeverria M., Sugiyama M., Nakamura K., *Machida C. and *Machida Y. A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis, Biol. Open, 5(7), 942-954, 2016 (DOI: 10.1242/bio.019109)[PubMed]
  

2015

• *Machida C., Nakagawa A., Kojima S., Takahashi H., and Machida Y. The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis,Wiley Interdiscip. Rev. Dev. Biol., 4(6), 655-671, 2015 (DOI: 10.1002/wdev.196)[PubMed]
  
• *Takahashi H., Kaniwa N., Saito Y., Sai K., Hamaguchi T., Shirao K., Shimada Y., Matsumura Y., Ohtsu A., Yoshino T., Doi T., Takahashi A., Odaka Y., Okuyama M., Sawada J., Sakamoto H., and Yoshida T. Construction of possible integrated predictive index based on EGFR and ANXA3 polymorphisms for chemotherapy response in fluoropyrimidine-treated Japanese gastric cancer patients using a bioinformatic method, BMC Cancer, 15(1), 718, 2015 (DOI: 10.1186/s12885-015-1721-z)[PubMed]
  
• Noh A. L., Watanabe S., Takahashi H., Naito S., and *Onouchi H. An upstream open reading frame represses expression of a tomato homologue of Arabidopsis ANAC096, a NAC domain transcription factor gene, in a peptide sequence-dependent manner, Plant Biotechnol., 32(2), 157-163, 2015 (DOI: 10.5511/plantbiotechnology.15.0519a)[J-STAGE]
  
• Jo A., Mitani S., Shiba N., Hayashi Y., Hara Y., Takahashi H., Tsukimoto I., Tawa A., Horibe K., Tomizawa D., Taga T., Adachi S., Yoshida T., and *Ichikawa H. High expression of EVI1 and MEL1 is a compelling poor prognostic marker of pediatric AML, Leukemia, 29(5), 1076-1083, 2015 (DOI: 10.1038/leu.2015.5) [PubMed]
  
• Kumasaka M. Y., Yajima I., Iida M., Takahashi H., Inoue Y., Fukushima S., Ihn H., Takeda K., Naito Y., Yoshikawa T. and *Kato M. Correlated expression levels of endothelin receptor B and Plexin C1 in melanoma, Am. J. Cancer Res., 5(3), 1117-1123, 2015 [PubMed]
  
• Ebina I., Takemoto-Tsutsumi M., Watanabe S., Koyama H., Endo Y., Kimata K., Igarashi T., Murakami K., Kudo R., Osumi A., Noh A. L., Takahashi H., Naito S., and *Onouchi H. Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner, Nucleic Acids Res., 43(3), 1562-1576, 2015 (DOI: 10.1093/nar/gkv018) [PubMed]
  

2014

• #Takahashi A., Nakayama R., Ishibashi N., Doi A., Ichinohe R., Ikuyo Y., Takahashi T., Marui S., Yasuhara K., Nakamura T., Sugita S., Sakamoto H., Yoshida T., Hasegawa T., and #*Takahashi H., Analysis of gene expression profiles of soft tissue sarcoma using a combination of knowledge-based filtering with integration of multiple statistics, PLoS ONE, 9(9), e106801, 2014 (DOI: 10.1371/journal.pone.0106801)[PubMed]
  
• *Takahashi H., Sai K., Saito Y., Kaniwa N., Matsumura Y., Hamaguchi T., Shimada Y., Ohtsu A., Yoshino T., Doi T., Okuda H., Ichinohe R., Takahashi A., Doi A., Odaka Y., Okuyama M., Saijo N., Sawada J., Sakamoto H., and Yoshida T., Application of a combination of a knowledge-based algorithm and 2-stage screening to hypothesis-free genomic data on irinotecan-treated patients for identification of a candidate single nucleotide polymorphism related to an adverse effect, PLoS ONE, 9(8), e105160, 2014 (DOI: 10.1371/journal.pone.0105160)[PubMed]
  

2013

• *Takahashi H., Kaniwa N., Saito Y., Sai K., Hamaguchi T., Shirao K., Shimada Y., Matsumura Y., Ohtsu A., Yoshino T., Takahashi A., Odaka Y., Okuyama M., Sawada J., Sakamoto H. and Yoshida T., Identification of a candidate single-nucleotide polymorphism related to chemotherapeutic response through a combination of knowledge-based algorithm and hypothesis-free genomic data, J. Biosci. Bioeng., 116(6), 768-773, 2013 (DOI: 10.1016/j.jbiosc.2013.05.021)[PubMed]
  
• *Takahashi H., Nakayama R., Hayashi S., Nemoto T., Murase Y., Nomura K., Takahashi T., Kubo K., Marui S., Yasuhara K., Nakamura T., Sueo T., Takahashi A., Tsutsumiuchi K., Ohta T., Kawai A., Sugita S., Yamamoto S., Kobayashi T., Honda H., Yoshida T., Hasegawa T., Macrophage migration inhibitory factor and stearoyl-CoA desaturase 1: Potential prognostic markers for soft tissue sarcomas based on bioinformatics analyses, PLoS ONE, 8(10), e78250, 2013 (DOI:10.1371/journal.pone.0078250)[PubMed]
  
• *Kotooka N., Komatsu A., Takahashi H., Nonaka M., Kawaguchi C., Komoda H., Asaka M., Abe S., Taguchi I., Toyoda S., Nishiyama M., Inoue T., Node K., Predictive value of high-molecular weight adiponectin in subjects with a higher risk of the development of metabolic syndrome: From a population based 5-year follow-up data, Int. J. Cardiol., 167(3),1068-1070, 2013[PubMed]
  
• Iwasaki M., Takahashi H., Iwakawa H., Nakagawa A., Ishikawa T., Tanaka H., Matsumura Y., Pekker I., Eshed Y., Vial-Pradel S., Ito T., Watanabe Y., Ueno Y., Fukazawa H., Kojima S., Machida Y. and *Machida C., Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis, Development, 140(9), 1958-1969, 2013 (DOI: 10.1242/dev.085365)[PubMed]
  
• Takahashi H., Iwakawa H., Ishibashi N., Kojima S., Matsumura Y., Prananingrum P., Iwasaki M., Takahashi A., Ikezaki M., Luo L., Kobayashi T., *Machida Y. and *Machida C., Meta-analyses of microarrays of Arabidopsis asymmetric leaves1 (as1), as2 and their modifying mutants reveal a critical role for the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development, Plant Cell Physiol., 54(3), 418-431, 2013[PubMed]
  
• *Chiba Y., Mineta K., Hirai M. Y., Suzuki Y., Kanaya S., Takahashi H., Onouchi H., Yamaguchi J. and Naito S., Changes in mRNA Stability Associated with Cold Stress in Arabidopsis Cells, Plant Cell Physiol., 54(2), 180-194, 2013[PubMed]
  

2012

• *Takahashi H., Nakagawa A., Kojima S., Takahashi A., Cha B. Y., Woo J. T., Nagai K., Machida Y. and Machida C., Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods, J. Biosci. Bioeng., 114(5), 570-575, 2012[PubMed]
  
• Takahashi H., Takahashi A., Naito S. and *Onouchi H., BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences, and its application to the Arabidopsis thaliana genome, Bioinformatics, 28(17), 2231-2241, 2012[PubMed]
  
• #Nakagawa A., #Takahashi H., Kojima S., Sato N., Ohga K., Cha B. Y., Woo J. T., Nagai K., Horiguchi G., Tsukaya H., Machida Y. and *Machida C., Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana, Plant Mol. Biol., 79(6), 569-581, 2012 (#: co-first authors)[PubMed]
  
• Yajima I., Kumasaka M. Y., Naito Y., Yoshikawa T., Takahashi H., Funasaka Y., Suzuki T. and
  *Kato M., Reduced GNG2 expression levels in mouse malignant melanomas and human melanoma cell lines, Am. J. Cancer Res., 2(3), 322-329, 2012[PubMed]
  

2011

• Yoshimura K., Mori T., Yokoyama K., Koike Y., Tanabe N., Sato N., Takahashi H., Maruta T.,
  *Shigeoka S., Identification of alternative splicing events regulated by an Arabidopsis
  serine/arginine-like protein, atSR45a, in response to high-light stress using a tiling array,
  Plant Cell Physiol., 52(10), 1786-1805, 2011[PubMed]
  
• Kojima S., Iwasaki M., Takahashi H., Imai T., Matsumura Y., Fleury D., Lijsebettens M. V.,
  Machida Y., *Machida C., ASYMMETRIC LEAVES2 and Elongator, a Histone Acetyltransferase Complex, Mediate the Establishment of Polarity in Leaves of Arabidopsis thaliana, Plant Cell Physiol., 52(8), 1259-1273, 2011[PubMed]
  

2010

• Sano M., Aoyagi K., Takahashi H., Kawamura T., Mabuchi T., Igaki H., Tachimori Y., Kato H.,
  Ochiai A., Honda H., Nimura Y., Nagino M., Yoshida T., *Sasaki H., Forkhead box A1 transcriptional pathway in KRT7-expressing esophageal squamous cell carcinomas with extensive lymph node metastasis, Int. J. Oncol., 36(2), 321-330, 2010[PubMed]
  

2009

• Matsuo N., Mase H., Makino M., Takahashi H., *Banno H., Identification of ENHANCER OF SHOOT REGENERATION 1-upregulated genes during in vitro shoot regeneration, Plant Biotechnol., 26(4), 385-393, 2009[J-STAGE]
  

2008

• *Takahashi H., Iwakawa H., Nakao S., Ojio T., Morishita R., Morikawa S., Machida Y., Machida C.,
  Kobayashi T., Knowledge-based Fuzzy Adaptive Resonance Theory and Its Application to the Analysis of Gene Expression in Plants, J.Biosci. Bioeng., 106(6), 587-593, 2008[PubMed]
  
• Kawamura T., Takahashi H., *Honda H., Proposal of new gene filtering method, BagPART, for gene expression analysis with small sample, J.Biosci. Bioeng., 105(1), 81-84, 2008[PubMed]
  

2007

• Nakayama R., Nemoto T., Takahashi H., Ohta T., Kawai A., Seki K., Yoshida T., Toyama Y.,
  *Ichikawa H., Hasegawa T., Gene expression analysis of soft tissue sarcomas: characterization and reclassification of malignant fibrous histiocytoma, Mod. Pathol., 20(7), 749-759, 2007 [PubMed]
  
• Takahashi H., Murase Y., Kobayashi T., *Honda H., New cancer diagnosis modeling using boosting and projective adaptive resonance theory with improved reliable index, Biochem. Eng. J.,
  33(2), 100-109, 2007[ScienceDirect]
  

2006

• Takahashi H., Nemoto T., Yoshida T., *Honda H., Hasegawa T., Cancer diagnosis marker extraction for soft tissue sarcomas based on gene expression profiling data by using projective adaptive resonance theory (PART) filtering method, BMC Bioinformatics, 7:399, 2006[PubMed]
  
• Takahashi H., Aoyagi K., Nakanishi Y., Sasaki H., Yoshida T., *Honda H., Classification of intramural metastases and lymph node metastases of esophageal cancer from gene expression based on boosting and projective adaptive resonance theory, J.Biosci. Bioeng., 102(1), 46-52, 2006[PubMed]
  
• Takahashi H., *Honda H., Lymphoma prognostication from expression profiling using a combination method of boosting and projective adaptive resonance theory, J. Chem. Eng. Jpn., 39(7),
  767-771, 2006[J-STAGE]
  
• Takahashi H., *Honda H., Modified signal-to-noise: a new simple and practical gene filtering approach based on the concept of projective adaptive resonance theory (PART) filtering method, Bioinformatics, 22(13), 1662-1664, 2006[PubMed]
  
• Takahashi H., *Honda H., Prediction of peptide binding to major histocompatibility complex class II molecules through use of boosted fuzzy classifier with SWEEP operator method, J.Biosci.Bioeng., 101(2),137-141, 2006[PubMed]
  

2005

• Takahashi H., *Honda H., A new reliable cancer diagnosis method using boosted fuzzy classifier with SWEEP operator method, J. Chem. Eng. Jpn., 38(9), 763-773, 2005[J-STAGE]
  
• Takahashi H., Kobayashi T., *Honda H., Construction of robust prognostic predictors by using projective adaptive resonance theory as a gene filtering method, Bioinformatics,
  21(2), 179-186, 2005[PubMed]
  

2004

• Takahashi H., Masuda K., Ando T., Kobayashi T., *Honda H., Prognostic predictor with multiple fuzzy neural models using expression profiles from DNA microarray for metastases of breast cancer, J.Biosci.Bioeng., 98(3),193-199, 2004[PubMed]
  

2003

• Takahashi H., Tomida S., Kobayashi T., *Honda H., Inference of common genetic network using fuzzy adaptive resonance theory associated matrix method, J.Biosci.Bioeng., 96(2),154-160, 2003[PubMed]